Write tests for Flux Simulator interactions
mbelmadani opened this issue · comments
Description
We have 2 scripts related to Flux Simulator that needs testing. One for download/install and pulling the assembly from ensembl, and one to merge the .pro files and generate the RNA-Seq data.
What I Did
Currently most of it is in bash. There's a python script that has to split the nonchromosomal DNA from ensembl into distinct fasta (one fasta per contig). This is can be tested with pytest and mock fasta files (work in progress.)
It would be nice to also have a test script for merging the .pro files as well.