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r-bioc-* is not picked up by 'r_binary_packages' entry

mikejiang opened this issue · comments

commented

I am new to r-travis, so maybe this has been asked before or should be reported to ppa:marutter/c2d4u instead.

r_binary_packages:
  - graph
  - RBGL
  - zlibbioc
  - Rgraphviz

These four binary package dependency would lead to the error

E: Unable to locate package r-cran-graph` .

Is there any alternative fix (e.g. add extra level of entry cran/bioc within r_binary_packages ) other than manually doing this

before_install:
  - sudo apt-get install -y r-bioc-rgraphviz r-bioc-rbgl r-bioc-zlibbioc r-bioc-graph
commented

If you are not too keen on using binary packages from Linux repos, you can switch your travis "language" (specified at the top of your .travis.yml file) to objective-c instead of c to use a Mac VM which will use binary packages by default and save you time. The r_binary_packages operation is meant only for CRAN packages and prepends 'r-cran-' to its arguments.