cooplab

popgen-notes

Population genetics notes

Popgen_teaching_code

Popgen_EVE102_2012

Pdfs of slides from 2018 popgen course

pophistory-tutorial

Tutorial on using popular tools for learning about population history

R_popgen_notes_code

dmc

Distinguishing among modes of convergent adaptation using population genomic data

genealogy

labdocs

A place for lab related documents

rhps_coalescent

Code associated with the paper "Reconstructing the history of polygenic scores using coalescent trees" by M.D. Edge and G. Coop.

startmrca

An R package to estimate the timing of selection for a beneficial allele.

admixcov_data_Simon_Coop

Variance decomposition analysis of UK and Bohemian human ancient DNA data

admixcov_sims_Simon_Coop

bees

Genomic project analyzing admixture in Africanized honey bees

Buffalo_Coop_selection_covariances

confoundedGWAS_Veller_Coop

conStruct

method for modeling continuous and discrete population genetic structure

convergence

eve102

hilo

Scripts related to publication: Calfee E, Gates D, Lorant A, Perkins MT, Coop G, Ross-Ibarra J (2021). Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. bioRxiv. https://www.biorxiv.org/content/10.1101/2021.03.05.434040v1

ldsim

An R/shiny simulation app for teaching linkage disequilibrium

mathii.github.com

Website

old_geology_mice_code

polygenic_outcomes_sexual_antagonism_Muralidhar_Coop

Simulation code for pre-print "Polygenic outcomes of sexually antagonistic selection" (doi: 10.1101/2023.03.02.530911)

py-admixcov-Simon_Coop

Python functions module for the admixture covariance project

qpc-maize

selection-against-introgression_Groh_Coop

selTime_neanderthal_AI

Inferring the time that selection favored Neanderthal introgressed alleles in modern human populations: statistical inference method, imputation of ancient samples, examples

SLiMsims_StabilizingSelection

Code to generate simulations of stabilizing selection on complex traits in SLiM and process output data

SpaceMix

tempautocov

Code and some data to reproduce Buffalo and Coop (2019)