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cokelaer / bioservices

Access to Biological Web Services from Python.

Home Page:http://bioservices.readthedocs.io

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KEGG warnings

Kronossos opened this issue · comments

commented

I found out that kegg parser (bioservices 1.10.0) has some small issues for:

['gn_T40001', 'gn_T40002', 'gn_T40003', 'gn_T40033', 'gn_T40092', 'gn_T40094', 'gn_T40097', 'gn_T40098', 'gn_T40100', 'gn_T40107', 'gn_T40123', 'gn_T40343']

I got:

WARNING [bioservices:keggparser:119]: 'list' object has no attribute 'split'
WARNING [bioservices:keggparser:119]: 'list' object has no attribute 'split'
WARNING [bioservices:keggparser:119]: 'list' object has no attribute 'split'
WARNING [bioservices:keggparser:119]: 'list' object has no attribute 'split'
WARNING [bioservices:keggparser:119]: Could not parse the entry Viral Genome correctly
WARNING [bioservices:keggparser:119]: Could not parse the entry Viral Genome correctly
WARNING [bioservices:keggparser:119]: Could not parse the entry Viral Genome correctly
WARNING [bioservices:keggparser:119]: Could not parse the entry Viral Genome correctly

This results in empty dictionary for k.parse(...).