Found keyword SYMBOL, which has not special parsing for now.

[goggle]

Hi,
I'm running bioservices 1.9.0, under python 3.8.10, and I was trying simple example below

k = KEGG()
k.organism = "hsa"
k.get_pathway_by_gene("7535","hsa")

And I receive the following output

WARNING [bioservices:keggparser:119]:  Found keyword SYMBOL, which has not special
    parsing for now. please report this issue with the KEGG
    identifier (7535              CDS       T01001) into github.com/bioservices. Thanks T.C.
Pfam  PK_Tyr_Ser-Thr Pkinase SH2 ABC1 Haspin_kinase Kdo
WARNING [bioservices:keggparser:119]:  Could not parse the entry CDS       T01001 correctly
WARNING [bioservices:keggparser:119]:  not enough values to unpack (expected 2, got 1)

And I have found very similar issue in #195 but the comment did not help.
I have tried :

• other gene ids or names with get_pathway_by_gene function
• Installing different versions of bioservices from �bioconda;

Thanks for any help!

[Thomas Cokelaer]

@ginkyenglee I am surprised you got that specific reference to the keywor 'SYMBOL' since it is included in the parser of bioservices 1.9.0

If you type

bioservices --version

do you indeed have v1.9.0 installed ?