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Yet another wrapper around SHIFTX+ for MD trajectories analysis but using MPI and HDF5

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LiveCoMS GROMACS Tutorials Paper

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GridMAT-MD membrane analysis program

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To run metadynamics simulations using openMM (based on Peter Eastman's script)

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metadynamics trajectory analysis by pyemma

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Tool for fast and lightweight vizualization of metadynamic results

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Files related to the nmrlipids.blogspot.fi

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NMRlipids IV project

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toy metadynamics example

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Using supervised machine learning to build collective variables for accelerated sampling

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Using neural networks for enhanced sampling in computational biophysics

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Efficient sampling of protein mutants via transfer learning from the wild-type simulation

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Accelerating MD and MSM by running Metadynamics along tICA coordinates

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Enhanced protein mutational sampling using time-lagged variational autoencoders

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