CMUSchwartzLab's repositories
cancer-phylogenetics-prognostic-prediction
Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
FISH_deconvolution
code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution
JointClustering
The joint clustering method for single cell miFISH and single cell whole genome copy numbers
SCS_deconvolution
code implementing methods for pooling bulk and single cell data for copy number deconvolution
Sc-TUSV-ext
Sc-TUSV-ext: Tumor evolutionary tree reconstruction from single-cell DNA-seq data of single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV).