Cyril Matthey-Doret's repositories
Acastellanii_genome_analysis
Comparative analysis of the genomes from two Acanthamoeba castellanii strains
Acastellanii_genome_annotation
Reproducible container-based pipeline for the annotation of the Acanthamoeba castellanii genome
Acastellanii_legionella_infection
Analysis of genomic changes induced in Acanthamoeba castellanii C3 following infection by Legionella pneumophila
HiC_scrambler
Introducing structural variations in Hi-C contact maps to try detecting and reversing them.
Acastellanii_hybrid_assembly
Hybrid genome assembly of Acanthamoeba castellanii. Combining long reads, Hi-C and shotgun.
cmdoret.github.io
My personal website
rdf-network-viz
Prefect workflow to visualize networks from RDF data
sequence_loopability
Investigating sequence features underlying chromatin loops
calamus
A JSON-LD Serialization Libary for Python
causalimpact
Python port of CausalImpact R library
genome_assembly_tools
List of genome assembly tools
jigsaw-toxic-comment-classification-challenge-2018
Improving best solutions from an old competition for educational purpose
mtg_ontology
An ontology describing cards in Magic The Gathering.
renku
The Renku Project provides a platform and tools for reproducible and collaborative data analysis.
renku-project-template
A repository for default Renku project templates.
renku-python
A Python library for the Renku collaborative data science platform.
strangerseq
Generate DNA sequences minimizing microhomology