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clicumu / doepipeline

A python package for optimizing processing pipelines using statistical design of experiments (DoE).

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Ideas for scaffolding example

druvus opened this issue · comments

commented

I think in the first round we could try the following setup for the scaffolding optimization.

Organism

  • E. coli (5Mbp)
  • F. tularensis (2 Mbp)

Assembly

  • Abyss
  • Spades

Scaffolder

  • SSPACE(-longread)
  • LINKS
commented

Example done so I am closing