Inês Mendes's repositories
metagenomic-assembler-comparison
An attempt to benchmark metagenomic assembly tools
PhD-Thesis
Shit gets real
wdl_assembly_wf
A small workflow for the assembly of short-read illumina data
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
blu13_exercise_app
repo to solve exercise notebook of ldssa blu13
contextual_data_QC_tags
Standardized attributes for labelling sequence datasets with known quality control issues
gambittools
A suite of tools for working with GAMBIT
hAMRonization_workflow
Harmonization of AMR predictor tool outputs
heard_lmas
Script to combine LMAS reports into a singular file
HMAS-QC-Pipeline2
an alternative pipeline without using mothur
HYBRIDLMAS_DEMO
HYBRIDLMAS report demo
learn-wdl
Educational materials for learning WDL
lists-conditionals--assignment-problem
lists-conditionals--assignment-problem - React coursework
LONGLMAS_DEMO
Demo report for LONGLMAS
metakrocus
Predict MLST directly from uncorrected long reads
nextflow_cheatsheet
Useful tips to get started with Nextflow
Western-WFD-2024
Resource for the Western Region WFD 2024 Training Event