chrovis / cljam

A DNA Sequence Alignment/Map (SAM) library for Clojure

https://chrovis.github.io/cljam

QUAL value overflows when writing VCF

nuggetoriniku opened this issue a year ago · comments

rnagata commented a year ago

VCF QUAL values may contain huge numbers that are out of the Integer range.
Attempts to write such data to a file will fail.

Example¹

chr1	143214613	rs1483186290	T	A	5.60878e+09	VQSRTrancheSNP99.95to100.00;PlatformBiasObserved	...

tommo-38kjpn-20220630-GRCh38-af-autosome.vcf.gz ↩