christopher-schroeder

Christopher Schröder's repositories

BamIO.jl

A simple library for working with BAM files in Julia.

Language:JuliaNOASSERTION1 20

dna-seq-strling

A pipeline to call short tandem repeats by short reads

Language:PythonMIT1 20

adaptive-style-transfer

source code for the ECCV18 paper A Style-Aware Content Loss for Real-time HD Style Transfer

Language:PythonGPL-3.0020

conda

OS-agnostic, system-level binary package manager and ecosystem

Language:PythonNOASSERTION020

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

Language:PythonMIT000

goo

just some useful functions for go

020

dna-seq-nanopore

snakemake portation of wf-human-variation

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gridssnake

snakemake implementation of gridss

Language:Python020

pogo

Texas hold em poker hand evaluator in go

Language:GoMIT020

PyPokerEngine

Poker engine for poker AI development in Python

Language:PythonMIT010

rahmannlab.github.io

Website of Rahmannlab

MIT000

single-cell-rna-seq

A single cell RNA-seq workflow following http://dx.doi.org/10.12688/f1000research.9501.2

Language:HTMLMIT000

snakemake-storage-plugin-sftp

A Snakemake storage plugin that handles files on an SFTP server.

MIT000

SnakemakeMethylation

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Sniffles

Structural variation caller using third generation sequencing

Language:PythonNOASSERTION000

snpsift_annotate_parallel

A script for parallelized execution of SnpSift annotate.

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STRling

Detect novel (and reference) STR expansions from short-read data

Language:NimMIT000

superSTR

A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.

Language:CGPL-2.0000

tfm

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tiger

Table Interface for Genomic Exploration and Reporting

Language:Python010

yolov3-keras-tf2

yolo(v3/v4) implementation in keras and tensorflow 2.2