chrchang / plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

Home Page:https://www.cog-genomics.org/plink/2.0/

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plans to get pgenlib on bioconda?

aryarm opened this issue · comments

Hi @chrchang ,

Our team really enjoys using the pgenlib python library in this repository. In fact, we like it so much that we've integrated it as a dependency in a toolkit that we're building. One component of our tool is a python library that can load VCFs and PGEN/PVAR/PSAM files into identical data structures.

We're nearing our initial release of this library, and we're considering publishing it to bioconda. (It's already on PyPI.) I understand that development of pgenlib is still underway, so I wanted to inquire about your plans to get the pgenlib python package on bioconda?

I would be happy to help with this in any way, if you feel like you're ready.

Thanks in advance for your reply and for developing such a useful resource for the community!

thank you!