problem about plink2

[Mia1037]

Hi，
In plink2, the --glm result is for A1, and the ALT_FREQS of the --freq result is for ALT, but ALT is not always equal to A1 in my data, so what I want to ask is how do I get both the P value and the frequency of ALT?

my code:
plink2 --bfile CRC --covar CRC_covariate.txt --glm hide-covar --freq --out CRC_result

Any suggestions would be greatly appreciated !

[Christopher Chang]

Please refer to the plink2-users Google group for usage questions.