chrchang / plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

Home Page:https://www.cog-genomics.org/plink/2.0/

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python setup.py incorrect path

KangchengHou opened this issue · comments

Here I am reporting two incorrect path in setup.py (i was trying to install with pip install -e . at 2.0/Python)
which is modified in commit 16a462e

  1. src/pgenlib/pgenlib.pyx seems to be incorrect?
    sources = ['src/pgenlib/pgenlib.pyx', 'src/plink2/pgenlib_ffi_support.cc', 'src/plink2/include/pgenlib_misc.cc', 'src/plink2/include/pgenlib_read.cc', 'src/plink2/include/pgenlib_write.cc', 'src/plink2/include/plink2_base.cc', 'src/plink2/include/plink2_bits.cc'],
  2. README.md should be ReadMe.md, or vice versa
    with open("README.md", "r", encoding="utf-8") as fh:

As always, thanks for this great library

Oops, I forgot to propagate part of this update; thanks for reporting this. Let me know if you still have a problem with this after 67aaf03 .