git cloned -> test data fail

[Ben Rambo-Martin]

OS: Ubuntu 16.04
Python v 2.7.12
Perl v 5.22.1
blast v 2.2.31+
ntthal installed

I cloned this repo attempted the test. No output. When I run with bash -x I get:

$ bash -x MSSPE-design.sh ZIKV-96seqs.fasta 13 500 250 50 0.1 2 -9000 8

• tyu=11365
  ++ basename MSSPE-design.sh
• mygname=MSSPE-design.sh
  ++ twin=hxB
  ++ export twins=hxB
  ++ twins=hxB
  ++ '[' hxB = hxB ']'
  ++ echo ']-L'
• valin=']-L'
  ++ more
• export LSIN=
• LSIN=
• export uscrpt=MSSPE-design.sh
• uscrpt=MSSPE-design.sh
  ++ uname
• MSUNAME=Linux
• export scriptstatus=Built
• scriptstatus=Built
• export mygname
• export tyu
  ++ printf '%s\n' ZIKV-96seqs.fasta 13 500 250 50 0.1 2 -9000 8
  ++ cut -f2-
• export 'yigzbn=ZIKV-96seqs.fasta
  13
  500
  250
  50
  0.1
  2
  -9000
  8'
• yigzbn='ZIKV-96seqs.fasta
  13
  500
  250
  50
  0.1
  2
  -9000
  8'
• '[' '!' -z ']-L' ']'
• kill -9 11365
  Killed

Any help is appreciated!
-Ben