Thomas Gregory's repositories
bioconda-recipes
Conda recipes for the bioconda channel.
bloom-filter
Bloom filters in Rust
bloomd
Bloom Filter and vectorized murmurhash3
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
const_soft_float
rust const soft float point library
d_hdf5
D wrappers for HDF5 - aiming ultimately at idiomatic D style. thanks to Fritjers
docx-rs
A Rust library for parsing and generating docx files.
dstep
A tool for converting C and Objective-C headers to D modules
htsget-rs
Pure Rust htsget server implementation
htslib
C library for high-throughput sequencing data formats
intel-intrinsics
Use Intel SIMD intrinsics syntax with D. Decorrelate codegen from semantics.
lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
LuaD
Bridge to Lua from the D programming language
minimap2-rs
Rust bindings to minimap2 library
parkour
An open-source Laboratory Information Management System (LIMS) for Next-Generation Sequencing (NGS)
PhageUniqueSeq
A java program to aid my research in finding unique primers for mycobacteriophages
PhageUniqueSeq-Go
My PhageUniqueSeq program ported to the Go language. Work In Progress.
polars
Fast multi-threaded, hybrid-out-of-core query engine focussing on DataFrame front-ends
python-docx-template
Use a docx as a jinja2 template
reconCNV
visualize CNV data from targeted capture based sequencing data
REID
A python program to simulate restriction enzyme digests.
rocket-session-store
An expansible rocket session store.
stdq
Route stdin/stdout through ZeroMQ
workerpool
A simple go worker pool