Chao-Jen Wong's repositories
bc-data-science-gcp
book club labs
countRepeats
Tools to count hits for repeat elements and enrichment/depletion analysis, and visualization. This package is a replacement of the rmskStats package.
data-science-on-gcp
Source code accompanying book: Data Science on the Google Cloud Platform, Valliappa Lakshmanan, O'Reilly 2017
domainCalling
Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq
Dux4-activated-dsRNAs
Tools and scripts supporting the analysis of peer-reviewed paper by Sean Shadle et. al. - DUX4 activates double stranded RNAs derived from pericentric human satellite II repeats.
FSHD-Biopsy-RNA-seq
Preprocessing pipeline and analysis codes for FSHD-Biopsy RNA-seq data
hg38
Tools to build TxDb and EnsDb packages of genome build hg38
made-mistakes-jekyll
:ghost: Source for my website and blog (Jekyll + Gulp + Travis CI)
rmskStats
Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats
SeqPipelineTools
Preprocessing, variants tools for RNA-seq, ChIP-seq analysis
UCSCTrackTools
Tools to make coverage or junction files (*.bed, *.bedGraph, *.bigWig) for RNA-seq and ChIP-seq data