CENTURI Multi-Engineering Platform

auto_metro

cataloger

Filling form for microscopy image annotations (on the biology side of things)

impomero

Omero auto importer

ProtruDe

Repository of ImageJ macros and plugins for detecting protrusion in the videos of SARS-CoV-2 spike protein, captured by high-speed atomic force microscope.

bioimage_databases_course

A 6 hours master course on bioimage management and databases

napari-openlabframe

olf_control

ply-zarr

A zarr implementation of the PLY specification

syringe_drivers

differential-expression_workflow

This workflow performs an RNA-seq analysis from the sequencing output data to the differential expression analyses.

metrologist

Microbiome-Analysis-Workflow

This workflow performs a metabarcoding analysis from the reads sequencing to the production of a report presenting the graphical results.

scRNAseq_analysis_workflow

Single-Cell RNA-seq analysis workflow for 10x Genomics data

3D-ImageJ-Suite

AdoptOmero

BD_BlobsSeg

Fiji macro to segment blobs-like organelles

BD_EpiCellSeg

BioimageDatabaseCourse

clicket

Adaptation of https://github.com/evereux/flicket app to suit our needs

flask-video-streaming

Supporting code for my article on video streaming with Flask.

git_tuto

git tutorial and playground

jolo

Jupyter / voilà interface to OLOGRAM

metatranscriptomics-bulkrnaseq_workflow

This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.

motorized-stereotaxic-arm

omero-at-centuri

optoPlate-96

All design files and scripts necessary for the construction and use of the optoPlate-96

primer_deeplearning

some basics and tips for starting a DL project

smlm-zarr

Software_Python_OpenLabFram

wiki

our wiki