Celio Santos-Jr.'s repositories
annopipe
Tired to have to search and parse your files in long processes? Do you still use several scripts to make annotation in your protein sequences? Using a single command annopipe will give you a parsed annotation using 6 databases, besides save your time. For more information look into the repository.
BEAF
BEAF - Referenced Binning Engine for Autonomous Finding
bioconda-recipes
Conda recipes for the bioconda channel.
Bioinformatics_scripts
Scripts UBC
CaCo
CaCo: A program for predicting carbon source competition and ecological type of interaction from genomes.
dummybinner
Dummy binner of contigs and reads that uses kmer frequencies, GC content and coverage. Few dependencies, basic results.
easel
Sequence analysis library used by Eddy/Rivas lab code
poutpourri_tools
This repository contains many scripts of general usage and tools which turns the bioinformatic daily task really simpler. Applications involves since from genomics, metagenomics and transcriptomics. Hope that it help you. If you use, you cite. ;)
interactivenn
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
lsaBGC
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
macrel
Predict AMPs in (meta)genomes and peptides
megahit
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
mummer
Mummer alignment tool
PPGBiotec_Bioinformatica_I
This repository contains the scripts for the discipline of Bioinformatics applied in the postgrad course in Biotechnology
PreAntiCoV
Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
SCNIC
Sparse Cooccurence Network Investigation for Compositional data