ceat-epfl / housing-deprivation-diarrhea

Assessing the association between housing deprivation features and diarrhea in informal settlements

Housing deprivation and diarrhea in informal settlements in Abidjan.

A replicable computational workflow to assess the association between housing deprivation features and the odds of diarrhea, based on cross-sectional household surveys.

Citation: Pessoa Colombo V, Chenal J, Koné B, Koffi JA, Utzinger J. Spatial distributions of diarrheal cases in relation to housing conditions in informal settlements: a cross-sectional study in Abidjan, Côte d'Ivoire. Int J Urban Health. 2023. https://doi.org/10.1007/s11524-023-00786-z.

Instructions to reproduce the analysis

1. Install conda

https://docs.conda.io/projects/conda/en/latest/user-guide/install/index.html

2. Create and activate environment

From the repository root, run:

conda env create -f environment.yml
conda activate diarrhea-informal-settlements

3. Input data

The input datasets are available in the 'data' folder.

4. Run the notebooks

Follow the order indicated in the names of the notebooks (order given by number in each notebook's prefix).