Charles Coulombe's repositories
cq-intro-python
Calcul Québec training : Introduction to Programming with Python - PYT101
magic_clusters
Magic Clusters recipes for various workshops
arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
bitsandbytes
8-bit CUDA functions for PyTorch
ColossalAI
Making large AI models cheaper, faster and more accessible
dedalus
A flexible framework for solving PDEs with modern spectral methods.
DeepSpeed-MII
MII makes low-latency and high-throughput inference possible, powered by DeepSpeed.
faiss
A library for efficient similarity search and clustering of dense vectors.
FastFold
Optimizing AlphaFold Training and Inference on GPU Clusters
LongStitch
Correct and scaffold assemblies using long reads
magic_infra
Magic Castle infrastructure for workshops
mandrake
Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
ntLink
Minimizer-based assembly scaffolding and mapping using long reads
Open3D-ML
An extension of Open3D to address 3D Machine Learning tasks
PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
pp-sketchlib
Library of sketching functions used by PopPUNK
python-novice-inflammation
Programming with Python
rmm
RAPIDS Memory Manager
Tangelo
Tools developed for running end-to-end chemistry workflows on quantum computers and simulators.
thrift
Apache Thrift
tigmint
⛓ Correct misassemblies using linked AND long reads
VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
vllm
A high-throughput and memory-efficient inference and serving engine for LLMs
will-cite
GNU Parallel will-cite
WISDEM
Wind Plant Integrated System Design and Engineering Model