Substructure query highlighting wrong atoms
cbouy opened this issue · comments
Cédric Bouysset commented
Performing a substructure query on molecules with explicit hydrogens currently highlights the wrong atoms.
Adding removeHs=True
fixes the problem but removes hydrogens from the picture which might be problematic depending on the use case.
Another more radical option (not really a solution) is to use substruct_highlight=False
to remove the highlighting...