cbiagii

CeTF

Repository for R package with an implementation of PCIT and RIF algorthms.

cvbioinfo2020

scrnaseq-bit

A docker image with R packages to analyze Single-Cell RNA-Seq data

scmatch

Docker image for scMatch: a single-cell gene expression profile annotation tool using reference datasets

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

cbiagii

cbiagii.github.io

CeTFDocker

Docker image for an implementation of PCIT and RIF algorthms in R

M3K-docs

MAGIC

Docker image for MAGIC (Markov Affinity-based Graph Imputation of Cells)

Pancreas_ductal_scRNAseq

The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche

presto

Fast Wilcoxon and auROC

scclusteval

Single Cell Cluster Evaluation

scvelo

RNA Velocity generalized through dynamical modeling

shiny-bioinformatics

http://tinyurl.com/cruk-shiny

snRNAseq_adipocyte

The following repository contains code for all scRNAseq analysis and visualization performed in the paper: "Multidimensional Single-Nuclei RNA-Seq Reconstruction of Adipose Tissue Reveals Mature Adipocyte Plasticity Underlying Thermogenic Response

tactile

Tactile is a Jekyll theme for GitHub Pages

target-prediction

A docker image with tools for predicting lncRNA and miRNA targets

velocyto.R

RNA velocity estimation in R