minfi error when building the website
catavallejos opened this issue · comments
After merging the last set of changes, I get an error because minfi cannot be installed.
As far as I understand, minfi is not needed as we have a 'local' copy of the methylation data. @hannesbecher could you please check this? I am not quite sure why we are loading minfi in all/some episodes.
If we remove it we will also need to update https://github.com/carpentries-incubator/high-dimensional-stats-r/blob/main/dependencies.csv accordingly and add a note to say what's the source of the data (similar to what was done for the prostate dataset)
Thanks!
Correction: I can see minfi is needed to manipulate the methylation data. @hannesbecher any chance you could try to debug why we are getting installation issues? If not, I can try to dig this next week,
I can fix this today
THANK YOU! @alanocallaghan
That would be much appreciated, @alanocallaghan !
Sorry for the delay, I try to monitor the build system but do feel free to ping me if it breaks again