Introduce the need for core classes in a storyline of exercises
kevinrue opened this issue · comments
Episode: https://carpentries-incubator.github.io/bioc-project/04-standard-Bioc-classes/index.html
Instructions
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- The Carpentries
Arrange classes as a story: e.g. BioString
Show that DNAString:
- can only contain ATCG
- can be translated
- etc.
Search for protein sequences with more than XX glutamines in a multi FASTA format, what biological function are they enriched for?
Reminder of suggested classes:
- Biostrings
- IRanges and GRanges
- GAlignments
- SummarizedExperiment and SingleCellExperiment
- MultiAssayExperiment
- QFeatures
In particular, GRanges are used in the bioc-rnaseq lesson
It could be helpful to introduce GRanges in this lesson (even though there is no direct depedency between the two lesson)