carpentries-incubator / bioc-project

Seems that something is going wrong when importing the actb.gtf file. The output doesn't show any ranges:

Relevant lines:

bioc-project/_episodes_rmd/07-genomic-ranges.Rmd

Lines 494 to 498 in 2300f76

    
           ```{r} 
        
           library(rtracklayer) 
        
           actb_gtf_data <- rtracklayer::import("data/actb.gtf") 
        
           actb_gtf_data 
        
           ```

I can confirm that this problem also occurs when running the Rmd locally. I checked the raw data file and there doesn't seem to be a problem with that, so the issue arises during the import.

Oh right, I forgot about that but yeah, I noticed it myself a while back and keep forgetting to get to it.

Gold star for anyone who fixes it :)

Found it :)

	```{r}
	library(rtracklayer)
	actb_gtf_data <- rtracklayer::import("data/actb.gtf")
	actb_gtf_data
	```

Missing data when importing `data/actb.gtf`