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carpentries-incubator / bioc-project

Introduction to the Bioconductor project

Home Page:https://carpentries-incubator.github.io/bioc-project

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Transition to workbench format

kevinrue opened this issue · comments

commented

Dear @zkamvar

When you get a chance, can you please help me transition this repository to the workbench format ?

Many thanks in advance and do let me know if I can help make the process easier in any way.

Best wishes
Kevin

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commented

Hello, yes, I can help with that. I'll try to add it to the transition repo hopefully today.

commented

I should be getting to the transition today. I was cleaning up a few things yesterday and today to make the transition a bit smoother (e.g. not modifying the library state while running the lesson: carpentries/lesson-transition@22ced01).

I am going to send a message here notifying everyone on this repository about what to expect and then set all permissions to read except for @csoneson, so that they can give permissions.

Here are some resources in the meantime:

  1. What you can expect from the transition 📹: https://carpentries.github.io/workbench/beta-phase.html#beta
  2. How to update your local clone 💻: https://carpentries.github.io/workbench/beta-phase.html#updating-clone
  3. How to update (delete) your fork (if you have one) 📹: https://carpentries.github.io/workbench/faq.html#update-fork-from-styles
commented

This lesson will be converted to use The Carpentries Workbench
To prevent accidental reversion of the changes, we are temporarily revoking
write access for all collaborators on this lesson:

If you no longer wish to have write access to this repository, you do not
need to do anything further.

  1. What you can expect from the transition 📹: https://carpentries.github.io/workbench/beta-phase.html#beta
  2. How to update your local clone 💻: https://carpentries.github.io/workbench/beta-phase.html#updating-clone
  3. How to update (delete) your fork (if you have one) 📹: https://carpentries.github.io/workbench/faq.html#update-fork-from-styles

If you wish to regain write access, please re-clone the repository on your machine and
then comment here with I am ready for write access :rocket: and the
admin maintainer of this repository will restore your permissions.

If you have any questions, please reply here and tag @zkamvar

commented

The deed is done. @csoneson, the infrastructure takes a few minutes to bootstrap and cache the packages for the lesson build). Once the build is done, I will switch github pages to deploy from the gh-pages branch and you will have your workbench lesson.

Thank you all for your enthusiasm and your patience!