carpentries-incubator / bioc-project

Introduction to the Bioconductor project

Home Page:https://carpentries-incubator.github.io/bioc-project

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Episode plan

kevinrue opened this issue · comments

A list of suggestions.
Feedback welcome.
Ticked boxes indicate topics that already have a dedicated episode.

  • Introduction to Bioconductor
  • Installing Bioconductor packages
  • Getting help
  • The S4 class system in Bioconductor: Vector, List, and DataFrame
  • Working with biological sequences
  • Working with genomic coordinates and intervals
  • Working with genomic file formats
  • Working with genomic annotations
  • Working with experimental data and metadata
  • Working with Bioconductor data hubs
  • Interactive visualisation
  • Genome browser visualisations
  • Working with microarray data
  • Working with ChIP-seq data
  • Working with DNA methylation data
  • Working with mass spectrometry data
  • Working with sequence variation data
  • Working with spatial transcriptomics data
  • Bioconductor and the tidyverse
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This issue has been moved to the discussion section here: #26