Carla Bello's repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BIO609_2019
Introduction to UNIX/Linux and Bash Scripting
BIO634_2019
BIO634 Next-Generation Sequencing 2 – Transcriptomes, Variant Calling and Biological Interpretation
Basset
Convolutional neural network analysis for predicting DNA sequence activity.
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bioconda-recipes
Conda recipes for the bioconda channel.
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
seaborn-data
Data repository for seaborn examples
URPP_tutorials
UZH Bioinformatic courses 2018 (Evolution in action)
BIO609_2020
Unix/Linux & Bash Scripting course - UZH
BIO634_2021
NGS lvl2 Course - Transcriptomics, variant calling, and biological interpretation.
CMplot
📊 Circular and Rectangular Manhattan Plot
drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
gtex-viz
GTEx Visualizations
Hello-friend
Testing
msa
Modular BioJS compoment for a multiple sequence alignment
pybam
Very simple, pure python, BAM file reader
rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows.
URPP2019
Bioinformatic tutorials 2019 - URPP "Evolution in action"