matrixStats error in fit_devil
giorgiagandolfi opened this issue · comments
Giorgia Gandolfi commented
I am trying to run fit_devil
function and I got this error:
> fit <- fit_devil(counts, design_matrix, overdispersion = T, size_factors = T, verbose = T, parallel = T)
Compute size factors
Error: [matrixStats (>= 1.2.0)] useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. See also ?matrixStats::matrixStats.options
Giulio Caravagna commented
Any issue that gets opened should have minimum code to reproduce the error, otherwise it's very hard to fix it.
Please provide one.
Giovanni Santacatterina commented
As today, the solution is to either downgrade the matrixStats
package using
remotes::install_version("matrixStats", version="1.1.0")
or by updating Bioconductor to the latest version.