Augustin Luna's repositories
snp_plotter
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
sysbiocancer2019
Tutorials for Pathway Commons (https://pathwaycommons.org) network analysis tools. Prepared for the Computational Systems Biology of Cancer course at Institut Curie
Beeline
BEELINE: evaluation of algorithms for gene regulatory network inference
blog
Personal blog
causalpath
A project for exploring differentially active signaling paths related to proteomics datasets
cbioportal_to_complexheatmap_oncoprint
Transform cBioPortal Oncoprint Download for ComplexHeatmap Oncoprint Visualization
cellline_citations
Cell Line Citation Count Pipeline Using Google Scholar
extract_go_slim_annotation
Extract GO annotations for a set of gene symbols using evidence types and counts from a GO Slim subset
famplex
Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
ga-beacon
Google Analytics collector-as-a-service (using GA measurement protocol).
GraphWriter
Code for "Text Generation from Knowledge Graphs with Graph Transformers"
netboxr
An R package to mark functional modules in the network analysis using data from pathwayCommons
network-analysis-tutorials
A tutorial for the mutex algorithm in R
paml
Protocol Activity Modeling Language
plms-graph2text
Investigating Pretrained Language Models for Graph-to-Text Generation
pmcTermGenes
Produce gene counts from full-text publications
rcellminerElasticNet
A collection of R functions that make use of the glmnet Elastic Net implementation.
shinyWidgets
shinyWidgets : Extend widgets available in shiny
simpleRCache
Simple result caching package for R
slugify
Takes a string and makes a user friendly and URL valid string.