CanDIG's repositories
python_model_service
Example CanDIG service following best practices in python. API viewable at:
candig-opa
Developing relevant rego policies for OPA CanDIGv2
candig.github.io
Website for the CanDIG project
htsget_app
Htsget API implementation based on the Htsget protocol
candig-data-portal
A data analytics and visualization portal for V2 CanDIG services.
candig-schemas
Data models and API definitions
candig-server-external-dashboard
A React.js-based dashboard enabling data visualization for candig-server APIs.
candig_authz_service
CanDIG Authorization Service.
candigv2-ingest
Ingest microservice for CanDIGv2
rnaget_service
Implementation of GA4GH rnaget API
clinical_ETL_code
A library to convert clinical data in csv format into json documents for CanDIG ingestion
federation_service
Microservice implementation of federation code from CanDIG v1 for CanDIG v2
candig-ingest
A Python CLI utility enabling batch ingestion and update for candig-server.
candigv2-authx
Common CanDIGv2 authorization and authentication code
datasets_service
Microservice implementation of dataset search services from CanDIG v1
github-action-pr-expanded
GitHub Action to Create Pull Request in Parent Repository when Submodules are Updated (Expanded)
mohccn-data
Synthetic test data for MOHCCN
mohccn-synthetic-data
A consistent synthetic dataset used for testing across the CanDIG stack.
MOHCCN_clinical_data_model
Documents and issue tracker for the Marathon of Hope clinical data model
normalize-ingest
PoC normalize-on-ingest pipeline using MinIO bucket notifications (webhooks) and Flask server/listener to trigger (CWL) workflows
redcap-cloud
a collection of files & scripts used for transferring clinical metadata from redcap cloud to CanDIG
repository-template
CanDIG repo template