cancerit / CaVEMan

SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib

Home Page:http://cancerit.github.io/CaVEMan

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

1.13.15: -x and -y parameters don't work in estep

zhuyezhang opened this issue · comments

Hi,

I found that -x and -y coverage parameters don't work in estep. Using -x -10, -x 10 and -x 1 can yield the same results. Does anyone know why this happens?

Thanks in advance!

Yezhang

Dave can you comment on this?