Visualization of Hic contact

Question

Visualization of Hic contact

ardy20 opened this issue 2 years ago · comments

ardy20 commented 2 years ago

Hello

Can we use BAM or BED files for the visualisation of the Hic contacts maps? Any command example?

Chenxi Zhou · Answer 1 · Mon Nov 28 2022 22:51:13 GMT+0800 (China Standard Time)

Hello Ardy20,

Sorry for the delayed reply. We have detailed explanations for the visualisation of the HiC data using Juicerbox in the main repo page and the in this bash script https://github.com/c-zhou/yahs/blob/main/scripts/run_yahs.sh.

Best,
Chenxi