sh build.sh
airfoilfo opened this issue · comments
I have followed every step respectively. But still faced with problems in this step. I used different computers and results never changed. computer feedback is:
Removing existing build
rm: 'src/fmm.so' silinemedi: Böyle bir dosya ya da dizin yok
Copying files
Configuring build
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for CC... no
checking for icpc... no
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for ftn... no
checking for ifort... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for ranlib... ranlib
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
checking for OpenMP flag of C++ compiler... -fopenmp
checking for mpiicpc... no
checking for mpicxx... mpicxx
checking for mpxlf90_rftn... no
checking for mpiifort... no
checking for mpif90... mpif90
checking for MPI_Init... yes
checking for MPI_Init in -lmpi... yes
checking for MPI_Init in -lmpich... yes
checking for MPI_Init in -lmpicxx... no
checking for MPI_Init in -lfmpi... no
checking for MPI_Init in -lmpichf90... no
checking for MPI_Init in -lmpi_cxx... yes
checking for mpirun... mpirun
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for x86 cpuid output... unknown
checking for x86-AVX xgetbv output... unknown
checking for x86 cpuid 0x00000000 output... d:756e6547:6c65746e:49656e69
checking for x86 cpuid 0x80000000 output... 80000008:0:0:0
checking for x86 cpuid 0x00000001 output... 306c3:4100800:7dfafbbf:bfebfbff
checking for x86 cpuid 0x00000007 output... 0:27ab:0:9c000600
checking for x86 cpuid 0x80000001 output... 0:0:21:2c100800
checking for x86-AVX xgetbv 0x00000000 output... 7:0
checking whether SSE3 is supported by the processor... yes
checking whether SSE3 is supported by the processor and OS... yes
checking whether C++ compiler accepts -msse3... yes
checking whether AVX is supported by the processor... yes
checking whether AVX is supported by the processor and OS... yes
checking whether C++ compiler accepts -mavx... yes
checking whether AVX2 is supported by the processor... yes
checking whether AVX2 is supported by the processor and OS... yes
checking whether C++ compiler accepts -mavx2... yes
checking whether AVX512-F is supported by the processor... no
checking whether AVX512-CD is supported by the processor... no
checking whether AVX512-PF is supported by the processor... no
checking whether AVX512-ER is supported by the processor... no
checking whether AVX512-VL is supported by the processor... no
checking whether AVX512-BW is supported by the processor... no
checking whether AVX512-DQ is supported by the processor... no
checking whether AVX512-IFMA is supported by the processor... no
checking whether AVX512-VBMI is supported by the processor... no
checking for C++ compiler vendor... gnu
checking for C++ compiler vendor... (cached) gnu
checking for a sed that does not truncate output... /usr/bin/sed
checking whether C++ compiler accepts -Werror=unknown-warning-option... no
checking whether C++ compiler accepts -diag-error warn... no
checking whether C++ compiler accepts -O0... yes
checking whether C++ compiler accepts -g... yes
checking whether C++ compiler accepts -Werror... yes
checking whether C++ compiler accepts -check all... no
checking whether C++ compiler accepts -debug all... no
checking whether C++ compiler accepts -diag-disable remark... no
checking whether C++ compiler accepts -fmudflap... yes
checking whether C++ compiler accepts -fno-strict-aliasing... yes
checking whether C++ compiler accepts -fsanitize=address... yes
checking whether C++ compiler accepts -fsanitize=leak... yes
checking whether C++ compiler accepts -fstack-protector... yes
checking whether C++ compiler accepts -ftrapuv... no
checking whether C++ compiler accepts -ftrapv... yes
checking whether C++ compiler accepts -traceback... no
checking whether C++ compiler accepts -Wall... yes
checking whether C++ compiler accepts -Warray-bounds... yes
checking whether C++ compiler accepts -Wbad-function-cast... no
checking whether C++ compiler accepts -Wcast-align... yes
checking whether C++ compiler accepts -Wcast-qual... yes
checking whether C++ compiler accepts -Wextra... yes
checking whether C++ compiler accepts -Wfatal-errors... yes
checking whether C++ compiler accepts -Wformat=2... yes
checking whether C++ compiler accepts -Wformat-nonliteral... yes
checking whether C++ compiler accepts -Wformat-security... yes
checking whether C++ compiler accepts -Winit-self... yes
checking whether C++ compiler accepts -Winline... yes
checking whether C++ compiler accepts -Wmissing-format-attribute... yes
checking whether C++ compiler accepts -Wmissing-include-dirs... yes
checking whether C++ compiler accepts -Wmissing-noreturn... yes
checking whether C++ compiler accepts -Wnested-externs... no
checking whether C++ compiler accepts -Wno-missing-field-initializers... yes
checking whether C++ compiler accepts -Wno-overloaded-virtual... yes
checking whether C++ compiler accepts -Wno-unused-local-typedefs... yes
checking whether C++ compiler accepts -Wno-unused-parameter... yes
checking whether C++ compiler accepts -Wno-unused-variable... yes
checking whether C++ compiler accepts -Wpointer-arith... yes
checking whether C++ compiler accepts -Wredundant-decls... yes
checking whether C++ compiler accepts -Wreturn-type... yes
checking whether C++ compiler accepts -Wshadow... yes
checking whether C++ compiler accepts -Wsign-compare... yes
checking whether C++ compiler accepts -Wstrict-aliasing... yes
checking whether C++ compiler accepts -Wstrict-overflow=5... yes
checking whether C++ compiler accepts -Wstrict-prototype... no
checking whether C++ compiler accepts -Wswitch-enum... yes
checking whether C++ compiler accepts -Wuninitialized... yes
checking whether C++ compiler accepts -Wunreachable-code... yes
checking whether C++ compiler accepts -Wunused-but-set-variable... yes
checking whether C++ compiler accepts -Wwrite-strings... yes
checking whether C++ compiler accepts -Wno-error=missing-field-initializers... yes
checking whether C++ compiler accepts -Wno-error=overloaded-virtual... yes
checking whether C++ compiler accepts -Wno-error=unused-local-typedefs... yes
checking whether C++ compiler accepts -Wno-error=unused-parameter... yes
checking whether C++ compiler accepts -Wno-error=unused-variable... yes
configure: OpenMP : yes
configure: MPI : yes
configure: CUDA : yes
configure: FP32 : no
configure: SIMD : -msse3 -mavx -mavx2
configure: Assert : yes
configure: Debug : no
configure: Vendor : gnu
configure: CXX : mpicxx
configure: FC : mpif90
configure: CXXFLAGS : -g -O2
configure: FCFLAGS : -g -O2
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating 3d/Makefile
config.status: creating config.h
config.status: executing depfiles commands
Compiling 3d
mpicxx -DHAVE_CONFIG_H -DJULIA_ENABLE_THREADING -Dhello_EXPORTS -I/home/bpm90/.julia/artifacts/391fa0630566129aba72c621b8b52aa5b0240563/include -I/snap/julia/86/include/julia -Wunused-parameter -Wextra -Wreorder -std=gnu++1z -O3 -DNDEBUG -fPIC -ffast-math -I. -I.. -DEXAFMM_WITH_OPENMP -msse3 -mavx -mavx2 -DNDEBUG -DEXAFMM_EAGER -funroll-loops -fabi-version=6 -Wfatal-errors -fopenmp -g -O2 -MT fmm-fmm.o -MD -MP -MF .deps/fmm-fmm.Tpo -c -o fmm-fmm.o test -f 'fmm.cxx' || echo './'fmm.cxx
In file included from exafmm.h:9,
from fmm.cxx:22:
complexify.h: In function ‘real_t imag(const real_t&)’:
complexify.h:35:34: warning: unused parameter ‘r’ [-Wunused-parameter]
35 | inline real_t imag(const real_t& r) {
| ~~~~~~~~~~~~~~^
In file included from fmm.cxx:23:
args.h: In constructor ‘exafmm::Args::Args(int, char**)’:
args.h:35:9: warning: ‘exafmm::Args::verbose’ will be initialized after [-Wreorder]
35 | int verbose; //!< Verbose mode
| ^~~~~~~
args.h:34:12: warning: ‘exafmm::real_t exafmm::Args::phi’ [-Wreorder]
34 | real_t phi; //!< Multipole regularizing acceptance criterion
| ^~~
args.h:93:5: warning: when initialized here [-Wreorder]
93 | Args(int argc=0, char ** argv=NULL)
| ^~~~
In file included from fmm.cxx:25:
dataset.h: In function ‘exafmm::Bodies exafmm::cube(int, int, int)’:
dataset.h:50:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
50 | for (size_t b=begin; b!=end; ++b) {
| ~^~~~~
dataset.h: In function ‘exafmm::Bodies exafmm::sphere(int, int, int)’:
dataset.h:67:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
67 | for (size_t b=begin; b!=end; ++b) {
| ~^~~~~
dataset.h: In function ‘exafmm::Bodies exafmm::octant(int, int, int)’:
dataset.h:86:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
86 | for (size_t b=begin; b!=end; ++b) {
| ~^~~~~
dataset.h: In function ‘exafmm::Bodies exafmm::plummer(int, int, int)’:
dataset.h:106:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
106 | while (b != end) {
| ~~^~~~~~
dataset.h: In function ‘void exafmm::initSource(exafmm::Bodies&, int, int)’:
dataset.h:137:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
137 | for (size_t b=begin; b!=end; ++b) {
| ~^~~~~
dataset.h:142:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
142 | for (size_t b=begin; b!=end; ++b) {
| ~^~~~~
mv -f .deps/fmm-fmm.Tpo .deps/fmm-fmm.Po
mpicxx -funroll-loops -fabi-version=6 -Wfatal-errors -fopenmp -g -O2 -o fmm fmm-fmm.o -lmpi_cxx -L/home/bpm90/.julia/artifacts/391fa0630566129aba72c621b8b52aa5b0240563/include/../lib -lcxxwrap_julia -fPIC -Wunused-parameter -Wextra -Wreorder -std=gnu++1z -O3 -DNDEBUG -shared -Wl,-rpath,: -L/home/bpm90/.julia/artifacts/391fa0630566129aba72c621b8b52aa5b0240563/include/../lib -lcxxwrap_julia -L/snap/julia/86/include/julia/../../lib -ljulia
Done!
so, what should i do?
also in my other experience is : ERROR: path/to/FLOWExaFMM appears to be a local path, but directory does not exist
I guess with "path/to/FLOWExaFMM" that you did not enter this, rather the output of e.g. "pwd" (which should return the path if you are currently in the directory in which you installed FLOWExaFMM ? In my experience if you have something like that before, it is just a wrong path.