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byoo

byoo

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byoo's repositories

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

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denovogear

A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)

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gatk

Official code repository for GATK versions 4 and up

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HiFi-somatic-WDL

Tumor-normal variant calling workflow using HiFi reads

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nanopore-scripts

Various scripts and recipes for working with nanopore data

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PEAR

Pair-End AssembeR

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Socrates

Socrates: Identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads

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STAAR

An R package for performing STAAR procedure in whole-genome sequencing studies

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STAARpipeline-Tutorial

The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline and STAARpipelineSummary

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vg

tools for working with genome variation graphs

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wdl

Workflow Description Language - Specification and Implementations

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