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budach / pysster

pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks

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Adding Tensorboard

fd0r opened this issue · comments

commented

Hi I was wondering if adding a tensorboard option is planned.

commented

No, not at the moment. With tensorboard you mean that you would like to visualize the layerwise activations throughout the training?

Edit:
I checked how tensorboard can be used with keras (that is the library I am using to build the network)
I can write tensorboard logs via a callback (https://keras.io/callbacks/#tensorboard), but it will only show you the training and validation loss over time (which already gets printed to the terminal). It will not show you the activation and weight histograms, because I am currently using a python generator to feed the validation data into my models and keras does not support this kind of output when using a generator. I don't really want to change my python generators at the moment, sorry.

commented

Ok, thanks for the fast answer!