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BALM_paired: embeddings generated from a 1k subsample of the paired test set do not show grouping by V gene

lsantuari opened this issue · comments

commented

Hello,

I cannot reproduce the grouping by V gene for the heavy and the light chain when using a subsample of 1000 sequences from your paired test set and generating the embeddings with the BALM_paired model.
Here is my notebook.

Update: The grouping with VH embeddings is clear when considering V gene groups instead of subgroups.

I am closing the issue.