Brian Hie's repositories
efficient-evolution
Efficient evolution from protein language models
viral-mutation
Language modeling of viral evolution
uncertainty
Learning with uncertainty for biological discovery and design
trajectorama
Multi-study integration of cellular trajectories
secure-dti
Realizing private and practical pharmacological collaboration
mutational-semantics-neurips2020
Learning mutational semantics
flash-attention
Fast and memory-efficient exact attention
protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
causaldag_examples
Example usage of https://github.com/uhlerlab/causaldag
CellBench_data
This contains the dataset for comparing scRNA-seq analysis methods
icml18-jtnn
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
louvain-igraph
Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.
Megatron-LM
Ongoing research training transformer models at scale
stripedhyena
Repository for StripedHyena-7B, a state-of-the-art beyond Transformer model