brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

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Bioconda recipe for somalier

tamuanand opened this issue · comments

Hi

Thanks for the great tool. Is it possible to have this made available via Bioconda

Thanks in advance

It is possible, but I haven't written a recipe. You could write one using the slivar or mosdepth recipe as a guide.

I copied mosdepth and borrowed a tiny bit from sliver and it seems to work!

bioconda/bioconda-recipes#36877

Only limitation is that following the slivar, recipe doesn't support OSX but 🤷‍♀️. At least this way there will be also biocontainers available :)

thanks for doing this James!