brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

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`Argument list too long' on 90k samples running ancestry

shukwong opened this issue · comments

I am trying to run ancestry on close to 90k samples and got the "Argument list too long" error from bash.
Is it possible to make somalier read in a file containing the path to the somalier files instead?

sorry, I found that it has been fixed. thanks!