brentp / peddy

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

ped file "missing phenotype"

svergult opened this issue · comments

Hi

We are successfully using Peddy. However, when using -9 or 0 in the phenotype column in the ped file, we always get "affected" instead of "missing" in the table within the html file after running Peddy. When using 1 and 2, we correctly see "not affected" and "affected" in the table. Are we doing something wrong?

Thanks in advance!

I have seen this too and haven't found where to fix in the code. I'll make another pass and see if I can resolve. Thanks for reporting.