Running peddy with provided vcf and ped file

[Julien Kann]

I attempted to run peddy with the provided vcf and ped files.

Command: python -m peddy -p 4 --plot --prefix ceph-1463 ceph1463.peddy.vcf.gz ceph1463.ped

Running Peddy version 0.4.3
Traceback (most recent call last):
File "/projects/academic/gbcstaff/utils/anaconda2/lib/python2.7/runpy.py", line 174, in _run_module_as_main
"main", fname, loader, pkg_name)
File "/projects/academic/gbcstaff/utils/anaconda2/lib/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File "/projects/academic/gbcstaff/utils/peddy/peddy/main.py", line 14, in
sys.exit(cli())
File "/projects/academic/gbcstaff/utils/anaconda2/lib/python2.7/site-packages/click/core.py", line 722, in call
return self.main(*args, **kwargs)
File "/projects/academic/gbcstaff/utils/anaconda2/lib/python2.7/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/projects/academic/gbcstaff/utils/anaconda2/lib/python2.7/site-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/projects/academic/gbcstaff/utils/anaconda2/lib/python2.7/site-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "/projects/academic/gbcstaff/utils/peddy/peddy/cli.py", line 162, in peddy
ped_obj = Ped(ped)
File "/projects/academic/gbcstaff/utils/peddy/peddy/peddy.py", line 441, in init
self._parse(ped)
File "/projects/academic/gbcstaff/utils/peddy/peddy/peddy.py", line 460, in _parse
sample = Sample.from_row(toks, header=self.header, warn=self.warn)
File "/projects/academic/gbcstaff/utils/peddy/peddy/peddy.py", line 262, in from_row
return cls(row[0], row[1], row[2] or "-9", row[3] or "-9", row[4], row[5],
IndexError: list index out of range