Giters

brentp / mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Error building 0.3.3

zlskidmore opened this issue · comments

commented

Hi,

I am running into an issue related to d4 when trying build the latest mosdepth release:

#35 158.2 CC: ../../../../root/.nimble/pkgs/d4-0.0.3/d4pkg/d4_sys.nim
#35 158.2 CC: ../../../../root/.nimble/pkgs/d4-0.0.3/d4.nim
#35 158.3 CC: mosdepth.nim
#35 158.3 /root/.cache/nim/mosdepth_d/@m..@s..@s..@s..@sroot@s.nimble@spkgs@sd4-0.0.3@sd4.nim.c:8:10: fatal error: d4.h: No such file or directory
#35 158.3  #include <d4.h>
#35 158.3           ^~~~~~
#35 158.3 compilation terminated.

Seems like the relevant line, I'm a bit loss as to how to clear this error when running the function-tests.sh script. FWIW all other tests complete successfully. I did install d4tools thinking that the d4.h file might then be found, but this did not seem to work either.

commented

Hi, if you don't need d4 support, you can ignore this problem. Otherwise, you'll have to install d4 to a standard location or one that the compiler can find.
If you build mosdepth without the d4 defined, like:

nim c -d:danger mosdepth.nim

then you should have a working binary (without d4 support)