brentp / hts-nim

nim wrapper for htslib for parsing genomics data files

Home Page:https://brentp.github.io/hts-nim/

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did recent change break nim CI ?

timotheecour opened this issue · comments

https://dev.azure.com/nim-lang/Nim/_build/results?buildId=1548&view=logs&jobId=78f5e02b-a1d2-5845-e7cb-2dfe2f07bbe5&j=78f5e02b-a1d2-5845-e7cb-2dfe2f07bbe5&t=3bbcee50-6afe-5a88-7353-cdd32e58ced3

Hint: bgzi [Processing]
Hint: csi [Processing]
Hint: stats [Processing]
CC: stdlib_assertions.nim
CC: stdlib_io.nim
CC: stdlib_system.nim
CC: hts/private/hts_concat.nim
CC: stdlib_parseutils.nim
CC: stdlib_strutils.nim
CC: hts/vcf.nim
CC: hts.nim
Hint:  [Link]
Hint: LOC: 47556; sec: 2.215; peakmem: 57.086MiB; build: Debug; proj: d:\a\1\s\pkgstemp\hts\src\hts.nim; out: d:\a\1\s\pkgstemp\hts\htss [SuccessX]
Hint: d:\a\1\s\pkgstemp\hts\htss  [Exec]
could not load: libhts.dll
Error: execution of an external program failed: 'd:\a\1\s\pkgstemp\hts\htss '

PASS: https://github.com/johnnovak/illwill C                       (27.63287544 secs)
PASS: https://github.com/AndreiRegiani/INim C                      ( 5.49948382 secs)
PASS: https://github.com/narimiran/itertools C                     ( 4.59094095 secs)
PASS: https://github.com/def-/iterutils C                          ( 6.16629267 secs)
PASS: https://github.com/LemonBoy/jstin C                          ( 6.41412973 secs)
PASS: https://github.com/pragmagic/karax C                         (17.10266876 secs)

likely. I have just updated to work with a new version of the libhts C library...

and, running nim c -r hts.nim as is done by testament, now requires the libhts.dll`

I guess you could remove the -r.

I can open a PR to that effect if it's helpful. Thanks for notifying me about this.