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brentp / hts-nim

nim wrapper for htslib for parsing genomics data files

Home Page:https://brentp.github.io/hts-nim/

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Question: what is the SAM_RGAUX flag?

nh13 opened this issue · comments

commented

I don't see it in the SAM spec. Is it related to long reads (cigars)? samtools/hts-specs#40

commented

I would guess that it lets the user decide if they want to decode the read-group aux fields from from CRAM.

I am closing this as the API for htslib is quite large, the goal of hts-nim is to allow access to all of it for savvy users while providing a simple API for the most-used parts.