Bramadi Arya's repositories
AdvBioChem
SCBC 613 - Advanced Skills in Biochemical Research
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-biomarkers
Curated List of Biomarkers, Blood Tests, and Blood Tracking
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
bengkuang
Analysis of NGS data
grant-program
VeChain Foundation General Grant Program
healthyr_book
R for Health Data Science
MEDAL
MEDAL (MicrobiomE Data AnaLysis)
MicFunPred
A conserved approach to predict functional profiles from 16S rRNA sequence data
single-cell-benchmarking-resources
Collection of papers & tools focused on benchmarking methods and datasets for single-cell data analysis.
documify
My documentation project
liger
R package for integrating and analyzing multiple single-cell datasets
Mastering-Ubuntu-Server-Fourth-Edition
Mastering Ubuntu Server, Fourth Edition, Published by Packt
pandas_data_tidying_and_visualisation
Workshops on Pandas, data tidying, and visualisation
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scPipe
a pipeline for single cell RNA-seq data analysis
scRNAseq_analysis_tutorial
Tutorial for scRNA-seq data analysis beginners using R
seurat
R toolkit for single cell genomics
shell-genomics
Introduction to the Command Line for Genomics
SingleCellExercise
My first single-cell analysis exercise
SingulaR
Some experimental programming