BovReg's repositories
nf-workshop20
BovReg Nextflow workshop and hackathon organized by the CRG on 17-20 November 2020
BovReg_eQTL
Repository
nf-faang-workshop20
Nextflow training material for FAANG workshop February 2020
atacseq-workshop-limoges
ATAC-seq tutorial to be used during Limoges Course (November 2022)
BovReg-Reproducibility
This repository aims to be a template to develop reproducible analyses for BovReg partners involved in bioinformatics
comm-data-portal-projects
Fork of the FAANG repository to capture FAANG project information and images for project specific pages on FAANG data portal. Original repo here:
IsomiR-Window
Isomir Window A system for analyzing small-RNA-seq data in an integrative and user-friendly manner
logos
Repository containing BovReg official logos
nf-cage
DSL2 NextFlow wrapped CAGE-Seq analysis pipeline from demultiplexing to base pair resolution read counting (i.e. compatible import to CAGEfightR)
nf-core-atacseq
nf-core original pipeline here:
nf-core-chipseq
nf-core original pipeline here:
nf-core-faang-wksh20
nf-core training material for FAANG workshop February 2020
nf-core-hic
Original nf-core pipeline here:
nf-core-methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
nf-core-nanoseq
Original nf-core pipeline here:
nf-core-rnaseq
Original nf-core pipeline here:
nf-core-rnaseq-bovreg
Original nf-core pipeline here:
nf-core-sarek
Original nf-core pipeline here:
nf-core-smrnaseq
A small-RNA sequencing analysis pipeline
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing