Benedikt Obermayer (bobermayer)

bobermayer

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Company:Berlin Institute of Health

Location:Berlin, Germany

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Benedikt Obermayer's repositories

RNAkira

RNA kinetic rate analysis

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RPFtools

scripts for analysis of ribosome profiling data

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sparsecluster

hierarchical agglomerative clustering for large and sparse datasets using pynndescent and gbbs SeqHAC

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bih-cluster

BIH Cluster Wiki

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bioconda-recipes

Conda recipes for the bioconda channel.

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cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

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gbbs

GBBS: Graph Based Benchmark Suite

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mgatk

mgatk: mitochondrial genome analysis toolkit

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MIRCA

Motif-Informed Read Coverage Analysis

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pynndescentSC

A Python nearest neighbor descent for approximate nearest neighbors

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