Benedikt Obermayer's repositories
sparsecluster
hierarchical agglomerative clustering for large and sparse datasets using pynndescent and gbbs SeqHAC
bih-cluster
BIH Cluster Wiki
bioconda-recipes
Conda recipes for the bioconda channel.
cellxgene_vip
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
gbbs
GBBS: Graph Based Benchmark Suite
mgatk
mgatk: mitochondrial genome analysis toolkit
MIRCA
Motif-Informed Read Coverage Analysis
pynndescentSC
A Python nearest neighbor descent for approximate nearest neighbors